Programme

Students Event (XBSS) Programme

During the morning of the main event’s first day (during 22nd October 2025), we are expecting to host the INB/ELIXIR-ES annual meeting as well as the RSG Student Symposium. You can find more information on the student symposium in its dedicated section.

Students Symposium Poster assignation

Posters marked with * are also presented during the first half of the JBI2025 event (JBI2025 Split A), and have been assigned the same poster slot. They do not need to be taken off after XBSS finishes, and can stay put until JBI2025 Split B has to be hung.

Panel Number	Poster name
1
2
3
4*	A Shallow Variational Model for Realistic Generation of Synthetic scRNA-seq Data
5*	A single-nucleus brain atlas of Parkinson’s Disease reveals cell-type and region-specific alterations
6	A computational tool for integrated variant analysis in melanoma progression using scalable genomics pipeline
7	A Human Pangenomic Catalogue of LINE-1 Polymorphisms
8	AI-Based Identification of Microbial Signatures for Early Colorectal Cancer Diagnosis
9
10	Analysis of Antiplatelet Activity through Protein Disulfide Isomerase (PDI) Inhibition by Peptides
11	Analyzing Combined Diet and Exercise Impact on Obese Children’s BMI via Microbiome
12*	An AI-Driven Approach for the In Silico Design of Candidate Compounds for Tuberculosis Drug Discovery
13	Beyond Enrichment: CURIE’s AI Platform for Contextualizing Transcriptomic Responses to Bacterial Pneumonia
14	Bioinformatics Analysis of Exomes from Nigerian Breast Cancer Patients
15	Biologically-Informed Variational Autoencoders for Interpretable Single-Cell Pathway Scoring
16
17*	Application of rMTA-EA Pipeline to Multi-Gene Metabolic Optimization in Alzheimer’s Disease
18	Comparative Transcriptomic Profiling of Type 1 Diabetes: A Work in Progress
19	COMPUTATIONAL TOOLS TOWARDS GRIN VARIANTS STRATIFICATION
20	Sex-Specific Extracellular Vesicles Signatures in Alcohol Use Disorder: Insights from Multiomics Integration
21	SQANTI-single cell: Quality control and curation of long-read single-cell sequencing data
22	Systematic exploration of the composition-to-function relationship in natural microbiomes with random forest
23	Decoding Translational Mechanisms Underlying Breast Cancer Patients Heterogeneity Using Polysome-Profiling
24*	BENCHMARKING OF SELF-DEVELOPED AND PUBLISHED IMAGE ALIGNMENT METHODS FOR SPATIAL TRANSCRIPTOMICS DATA
25
26*	BI&AI Meet Liquid Biopsy: Paving the Way for Next-Generation Cancer Research
27	EWSR1::RORA and RORB fusions define a rare and transcriptionally distinct sarcoma subtype
28	Exploring the Interplay Between Structural Variants and Gene Regulation Through Long-Read Multiomics
29	FEDERA Salud: An Interoperable Node for Federated Health Data Spaces Using SIMPL.
30
31*	Cells2Spine: Mapping the Cellular Landscape of Spinal Cord Injury with Spatial Transcriptomics and Single-Cell RNA-Seq
32	GWAS of hospitalized COVID-19 patients in Morocco
33
34	UNDERSTANDING COLORECTAL CANCER LUNG METASTASIS USING SINGLE CELL AND SPATIAL TRNASCRIPTOMICS
35	TGFβ alters the alternative splicing pattern in hepatic stellate cells
36*	CSIC-ELIXIR portfolio: Bioinformatic software from CSIC in European infrastructure
37	Impact of Cesarean Section on Early Gut Microbiota Development
38	Sex-Specific Variations in Gut Microbiota Composition Among Children with Phenylketonuria (PKU)
39*	Deciphering lipidomics landscape of urine extracellular vesicles in alcohol consumption.
40
41	RAPTOR functional characterization in Chlamydomonas reinhardtii nitrogen metabolism and signalling
42*	Decoding PDAC Tumor Microenvironment in Asthmatic and Allergic Patients: A Spatial Perspective
43	Repair or remove: study of the molecular strategies in primates to promote tumor suppression, longevity, and bigger bodies (PRIMAPETO)
44*	Detection of meiotic recombination in centromeres
45
46	Missense variants pathogenicity annotation from homologous proteins
47	Mutational and structural analysis of gamma actin in the filamentous fungus Aspergillus nidulans.
48	Proteomic Analysis of Molybdate Response in Aspergillus nidulans Using LC-MS/MS and Comparative Software Pipelines
49	QSAR MODEL DEVELOPMENT TO PREDICT ANTIOXIDANT ACTIVITY IN CANNABACEAE MOLECULES
50
51	TRANSCRIPTION FACTOR-BASED BIOSENSORS DESIGN WITH PROTGPT2
52	Spatial Transcriptomics Reveals Immune Activation Mechanisms in MSI versus MSS Colon Cancer
53	Uncovering new gene–rare disease associations using Systems Biology in WES and WGS
54*	From Core to Full Genome-Scale: Modelling Cancer Metabolism with Enhanced Predictive Power
55*	Functional and Community Structure Dynamics of Rare Plant-Associated Microbes
56*	GlobalPred: Facilitating the Interpretation of Genetic Variants for Precision Medicine
57	SynthGWAS: A Privacy-Preserving Generator for Synthetic Genomic Cohorts
58*	Integrating cell type specific signals improves TF targeting in TFEA.ChIP
59
60	Uncovering Genetic Diversity and Evolutionary Relationships of African Staphylococcus aureus Strains through 16S rRNA Phylogenetics
61*	MD-core: a new Nextflow pipeline for molecular dynamic simulations
62*	Parameter optimization for AI-Based automatic single-cell annotation
63*	Prioritisation and Functional Interpretation of Transposable Element Insertions in Type 2 Diabetes Using Lasso Regression: A Whole Exome Sequencing Case Study
64*	RELECOV-Platform: a national bioinformatics infrastructure for genomic surveillance of respiratory viruses.
65*	Sepsis prediction in emergency care using machine learning
66
67	Identifying Drivers of Drought Adaptation in Poplar Trees Using Cutting-Edge Bioinformatics on Single-Cell RNA-Seq Data
68*	The challenge of inferring interactions from microbial metagenomic data
69*
70*	Uncovering the plasma miRNA signature of smoking
71*	Understanding plant and plant-associated microbiome responses to abiotic stress through multi-omics
72
73	Virome Shifts in Pancreatic Ductal Adenocarcinoma: New Insights from Untargeted Metagenomics
74	Unveiling the Genetic Diversity of Salmonella enterica in Africa through 16S rRNA Phylogenetic Analysis
75*	Tools for High-Throughput Sequencing Data Management in Public Health Bioinformatics Facilities
76	Unveiling disease connections through molecular signatures
77*	Exploring the Relationship Between Structural Metamorphism and Protein Multifunctionality

Main Event (JBI2025) Programme

13:30 h – 14:00 h	Registration and Refreshments Get your bag & lanyard Split A poster presenters: This is your time to hang your posters!
14:00 h – 14:30 h	Opening Ceremony Fátima Al-Shahrour, Spanish National Cancer Research Center (CNIO), INB/ELIXIR-ES* José María Carazo, National Centre for Biotechnology (CNB-CSIC), INB/ELIXIR-ES* Raquel Yotti, Commissioner of the Strategic Project for Economic Recovery and Transformation for Advanced Healthcare (PERTE) Rosario Perona, Deputy Director of Cell Therapy and Regenerative Medicine (ISCIII) *Event co-chair
14:30 h – 15:30 h	Keynote #1 – Gene regulation of humen cell systems Roser Vento-Tormo (Wellcome Sanger Insitute, Hinxton)
15:30 h – 16:30 h	Highlight Session #1 (15min talk + 5min Q&A) Chair: Fátima Al-Shahrour, Spanish National Cancer Research Center (CNIO), INB/ELIXIR-ES Uncovering Functional IncRNAs by scRNA-seq with ELATUS Mikel Hernáez, Center for Applied Medicine (CAM-UNAV) Quality assessment of long read data in multisample lrRNA-seq experiments with SQANTI-reads Carolina Monzó, Institute of Integrative Systems Biology (I2SysBio-CSIC) The Spanish Polygenic Score reference distribution: a resource for personalized medicine Daniel López-López, Fundación Pública Andaluza Progreso y Salud (FPS)
16:30 h – 17:00 h	Networking coffee break and Posters (Split A) Have a coffee, ask the authors about their work
17:00 h – 18:00 h	Topics Session #1 – Genomes (12min talk + 3min Q&A) Chair: Pablo Minguez, Jiménez Díaz Health Research Center (IIS-FJD) SynthGWAS: A Privacy-Preserving Generator for Synthetic Genomic Cohorts Rodrigo Shu Liu, Systems and Computers Engineering Institute (INESC-ID/BioData.pt) Dissecting the functional landscape of rare diseases Graciela Uria, IIS-Fundación Jiménez Díaz University Hospital (IIS-FJD, UAM) A standalone workflow for mutational signature analysis in cancer and normal tissues José Córdoba-Caballero, Spanish National Cancer Research Center (CNIO) Sex and smoking influence the clonal structure of the normal human bladder Raquel Blanco Martinez-Illescas, Barcelona Biomedical Research Institute (IRB)
18:00 h – 19:00 h	ELIXIR – The European Life Sciences Infrastructure Chair: Salvador Capella-Gutiérrez, Barcelona Supercomputing Centre (BSC), INB/ELIXIR-ES Introduction to ELIXIR Tim Hubbard – Director of ELIXIR ELIXIR Spain – INB Alfonso Valencia – Director of INB/ELIXIR-ES ELIXIR Portugal – BioData.pt Luciana Peixoto – Node Coordinator of BioData.pt/ELIXIR-PT
19:00 h	Day closing remarks Goodbye (for today)!

09:00 h – 10:00 h	Keynote #2 – Drivers of cancer evolution: not a fixed target Francesca Ciccarelli (Francis Crick Institute)
10:00 h – 11:00 h	Highlight Session #2 (15min talk + 5min Q&A) Chair: Ana Conesa, Institute of Integrative Systems Biology (I2SysBio-CSIC), INB/ELIXIR-ES Decoding functional proteome information in model organisms using protein language models Ana Rojas, Andalusian Centre for Developmental Biology (JdA-CSIC-UPO) MOSim: bulk and single-cell multilayer regulatory network simulator Carolina Monzó, Institute of Integrative Systems Biology (I2SysBio-CSIC) Towards a more inductive world for drug repurposing approaches Uxía Veleiro, Applied Medicine Research Centre (CIMA-UNAV)
11:00 h – 11:45 h	Networking coffee break and Posters (Split A) Have a coffee, ask authors about their work
11:45 h – 13:00 h	Topics Session #2 – Proteins (12min talk + 3min Q&A) Chair: Ana Rojas, Andalusian Centre for Developmental Biology (JdA-CSIC-UPO) A large-scale phylogenetic protein-coding genome–phenome map of complex traits across primates David Juan, National Centre for Biotechnology (CNB-CSIC) Protposer: rational protein stabilization using machine learning Helena García-Cebollada, Zaragoza University (IUI-BIFI) Structural modeling of antibody-antigen complexes with AlphaFold and pyDock Juan Fernández-Recio, Institute of Grapevine and Wine Sciences (ICVV-CSIC-UR-La Rioja Regional Govt.) Merging experimental CryoEM conformational landscapes with FlexConsensus Jose Maria Carazo, National Centre for Biotechnology (CNB-CSIC), INB/ELIXIR-ES nf-core/proteinfold: a standardise pipeline hub for protein structure prediction methods Jose Espinosa-Carrasco, Centre for Genomic Regulation (CRG)
13:00 h – 14:30 h	Networking lunch and Posters (Split A) Have lunch, ask authors about their work Split A poster presenters: Make sure to employ the last 10 minutes in leaving your space to Split B poster presenters. Split B poster presenters: Make sure to hang your posters before the end of the break!
14:30 h – 15:30 h	Topics Session #3 – Systems Biology and Multiomics (12min talk + 3min Q&A) Chair: Miguel Rocha, Minho University In silico exploration of microbial community landscapes reveals global epistasis patterns Miguel D. Fernández-de-Bobadilla, Functional Biology and Genomics Institute (IBFG USAL-CSIC) Long-Read Based Multiomic Profiling Reveals Epigenetic Drivers of Immunotherapy Resistance in Multiple Myeloma Tomás Di Domenico, Spanish National Cancer Research Center (CNIO) Systems Biology and Explainable AI Ensembles to Uncover Complex Diseases Iria Pose-Lagoa, Barcelona Supercomputing Center (BSC) Cell atlases and the Developmental Foundations of the Phenotype Alicia Lou, National Centre for Biotechnology (CNB-CSIC)
15:30 h – 16:45 h	Topics Session #4 – Single-cell Omics (12min talk + 3min Q&A) Chair: Fátima Sánchez-Cabo, Spanish National Center for Cardiovascular Research (CNIC) Revealing the Single-Cell Therapeutic Landscape Across Cancers María González Bermejo, Spanish National Cancer Research Center (CNIO) TensorGRN: Functionally deconvolving the cellular global regulatory landscape via tensor factorization Ignacio Garzón, Mikel Hernaez, Fernando Lecanda, Núria Planell Systematic assessment of microenvironment-dependent transcriptional patterns and intercellular communication Elena Pareja-Lorente, Barcelona Insitute for Biomedical Research (IRB) Mechanistic inference of cell state transitions via Boolean GRNs from single-cell data Roger Casals Franch, Central Catalonian Life and Health Sciences Research and Innovation Institute (Iris CC) Single nucleus RNA-seq reveals OSM/OSMR role in liver cancer Uxue Alvarez-Huesa, Biogipuzkoa Health Research Institute (Biogipuzkoa HRI)
16:45 h – 17:15 h	Networking coffee break & Posters (Split B) Have a coffee, ask authors about their work
17:15 h – 18:15 h	Keynote #3 – TBD Raúl Rabadán, Columbia University/CNIO
18:15 h – 20:00 h	Day closing remarks & Cocktail Cheese, Wine and Goodbye (for today)!

09:15 h – 10:00 h	Topics Session #5 – Microbiomes & Planetary Health (12min talk + 3min Q&A) Chair: Enrique Carrillo de Santa Pau, Research Institute on Food & Health Sciences (IMDEA food) Virome Shifts in Pancreatic Ductal Adenocarcinoma: New Insights from Untargeted Metagenomics Pablo Villoslada-Blanco, Spanish National Cancer Research Center (CNIO) Novel computational tools for high-throughput design and analysis of microbial consortia Alberto Pascual García, National Centre for Biotechnology (CNB-CSIC) Beyond taxonomy: global patterns of gene family abundances reveal functional ecological drivers in soil microbiomes Adrián López-García, Centre for Plants Genomics and Biotechnology (CBGP UPM, INIA-CSIC)
10:00 h – 11:00 h	Highlight Session #3 (15min talk + 5min Q&A) Chair: Jaime Huerta-Cepas, Centre for Plants Genomics and Biotechnology (CBGP UPM, INIA-CSIC), INB/ELIXIR-ES Evolutionary analysis of gene ages across TADs associates chromatin topology with whole-genome duplications Daniel Rico, Andalusian Centre for Molecular Biology and Regenerative Medicine (CABIMER) Gene expression networks regulated by human personality Coral del Val, University of Granada (UGR) MORE interpretable multi-omic regulatory networks to characterise phenotypes Sonia Tarazona, Universitat Politècnica de València (UPV)
11:00 h – 11:45 h	Networking coffee break and Posters (Split B) Have a coffee, ask authors about their work
11:45 h – 12:45 h	Highlight Session #4 (15min talk + 5min Q&A) Chair: Bruno Contreras Moreira, Aula Dei Experimental Station (EEAD CSIC-UNIZAR), INB/ELIXIR-ES The integrated genomic surveillance system of Andalusia (SIEGA) provides a One Health regional resource connected with the clinic Carlos S. Casimiro-Soriguer, Andalusian Platform for Comp. Medicine (FPS) MOSCA 2.0: A bioinformatics framework for metagenomics, metatranscriptomics and metaproteomics data analysis and visualization Andreia Salvador, Centre of Biological Engineering (UMinho) Exploring miRNA-target gene pair detection in disease with coRmiT Elena Rojano, University of Málaga (CIBERER, IBIMA-BIONAND)
12:45 h – 14:15 h	Networking lunch and Posters (Split B) Have lunch, ask authors about their work
14:15 h – 15:15 h	Topics Session #6 – Digital Health (12min talk + 3min Q&A) Chair: Ana Teresa Freitas, Systems and Computer Engineering Institute (INESC-ID), BioData.pt/ELIXIR-PT Disentangling the genetic and non-genetic origin of disease co-occurrences Beatriz Urda García, Barcelona Supercomputing Center (BSC) Decoding Translational Mechanisms Underlying Breast Cancer Patients Heterogeneity Using Polysome-Profiling Adrian Garcia-Moreno, Karolinska Institutet Variable Influence Analysis for Risk Assessment in Age-Related Macular Degeneration Joana Martins, Universidade de Aveiro FEDERA Salud: An Interoperable Node for Federated Health Data Spaces Using SIMPL Paloma Bravo del Cid, Computational Health Informatics Group, (IBIS-HUVR-CSIC-US)
15:15 h – 16:15 h	Keynote #4 – Feeding Hungry AI with Evolution-Augmented Data: Alignments, Phylogenies, and Next Gen Pipelines Cedric Notredame, Centre for Genomic Regulation (CRG), INB/ELIXIR-ES
16:15 h – 16:30 h	Best poster, oral talk and highlight talk prizes Javier De Las Rivas, Cancer Research Centre (CiC-IBMCC, USAL-CSIC), INB/ELIXIR-ES Ana Teresa Freitas, Instituto de Engenharia de Sistemas e Computadores – Investigação e Desenvolvimento (INESC-ID), BioData.pt/ELIXIR-PT
16:30 h	Fátima Al-Shahrour, Spanish National Cancer Research Center (CNIO), INB/ELIXIR-ES* José María Carazo, National Centre for Biotechnology (CNB-CSIC), INB/ELIXIR-ES* Isabel Díaz, CSIC Deputy Vice-President for International Cooperation & the Organisation Committee. *Co-chairs of the event

Panel Number	Poster name
1	A Bioinformatics Pipeline Reveals a Shared IκBα Interface for NF-κB and Histone Binding
2	A pan-gene catalogue of Asian cultivated rice
3	A Pangenome graph for the olive tree (Olea europaea)
4	A Shallow Variational Model for Realistic Generation of Synthetic scRNA-seq Data
5	A single-nucleus brain atlas of Parkinson’s Disease reveals cell-type and region-specific alterations
6	Accurate Post-Mortem Interval Prediction Using Human Thanatotranscriptome for Forensic Applications
7	Advancing Epigenetic Clocks: Platform Compatibility and Tissue Specificity
8	AI tool for classification of variants of uncertain significance (VUS) in cancer
9	AI-based prediction for safe antibiotic optimization
10	AI-Driven Multi-Modal Pipeline for Functional Annotation of Plant Cytochrome P450s
11	Alternative splicing analysis on Olaparib-treated HGSOC organoids
12	An AI-Driven Approach for the In Silico Design of Candidate Compounds for Tuberculosis Drug Discovery
13	An interpretable and adaptive autoencoder for efficient tissue deconvolution
14	An ontology-driven text mining approach to identify phenotype-relevant literature for patients with rare diseases.
15	Analytical Visualization Tools for Next-Generation Sequencing Data Analysis
16	ANI-based species reclassification at the human-associated Bifidobacterium genus and the functional divergence in the core proteome
17	Application of rMTA-EA Pipeline to Multi-Gene Metabolic Optimization in Alzheimer’s Disease
18	Assessing the feasibility of cancer subtype prediction from synthetic transcriptomic profiles
19	Assignment of gene markers to hematological and immune cells based on single-cell RNA-seq data, using a machine learning assessment.
20	auto-Enrich: a pipeline for Streamlined Enrichment Analysis
21	auto-p2docking pipeline for protein-protein interaction prediction: mitophagy dysregulation in spinocerebellar ataxia type 3 (also known as Machado-Joseph disease) as test case
22	Automated pipeline for mining human genes associated with microbiota in literature
23	Automating the Kalimuthu Morphological Classification of Pancreatic Cancer with Foundation Models and Synthetic Images
24	Benchmarking of new and published image alignment methods for spatial transcriptomics data
25	Beyond target-based drug design: de novo generation of selective, small molecule cytotoxics
26	BI&AI Meet Liquid Biopsy: Paving the Way for Next-Generation Cancer Research
27	BinderFlow: A batch-based pipeline for protein binder design
28	Bioinformatic analysis of non-sarcomeric hypertrophic cardiomyopathy
29	BioResearchAtlas – Discovering, Integrating and Exploiting biomedical research resources
30	Bridging pharmacogenomics and AI for enhanced cancer drug target identification using a network-based approach.
31	Cells2Spine: Mapping the Cellular Landscape of Spinal Cord Injury with Spatial Transcriptomics and Single-Cell RNA-Seq
32	Challenges in Multi-Omic Survival Analysis: The Coxmos Approach
33	Clonal Gene Alteration Profiles During Adaptation of Cancer Cells to Tyrosine Kinase Inhibitors
34	Clonucopya: A computational workflow for drug prioritization based on clonal tumor heterogeneity
35	COOLGPU: Next Generation Modeling Approaches
36	CSIC-ELIXIR portfolio: Bioinformatic software from CSIC in European infrastructure
37	CSVS: A comprehensive bioinformatics framework for genetic variability in Spain
38	Cyclin D proto-oncogene enhancers revealed by harmonized human epigenome EpiATLAS resource
39	Deciphering lipidomics landscape of urine extracellular vesicles in alcohol consumption
40	Deciphering the role of adipose tissue in obesity pathogenesis
41	Decoding Melanoma Heterogeneity Through Single-cell Data Integration
42	Decoding PDAC Tumor Microenvironment in Asthmatic and Allergic Patients: A Spatial Perspective
43	Design and application of a bioinformatic pipeline for methylation analysis in patients with KBG syndrome.
44	Detection of meiotic recombination at Arabidopsis centromeres
45	Disentangling Folding Entropy: A Multi‑Method Analysis of Protein and Solvent Contributions
46	Dissecting Pancreatic Tumor–Diabetes Interactions Using Multilevel Models in Spatial Transcriptomics
47	DMPPred: a tool for identification of antigenic regions responsible for inducing type 1 diabetes mellitus
48	Dynamic Modeling of Growth and Pigment Accumulation in Dunaliella salina
49	Empowering long reads annotations using SQANTI-annotation
50	Enabling FAIR and Federated Access to the GCAT cohort through OMOP, Beacon, and DataSHIELD
51	Enhancing Software Quality in Research: Applying EVERSE insights to the B1MGplus project
52	Evaluating Internal Validation Methods for Predictive Modelling in High-Dimensional Transcriptomic Data
53	Expanding the small molecule repertoire towards precision drugs through AI generative models
54	From Core to Full Genome-Scale: Modelling Cancer Metabolism with Enhanced Predictive Power
55	Functional and Community Structure Dynamics of Rare Plant-Associated Microbes
56	GlobalPred: Facilitating the Interpretation of Genetic Variants for Precision Medicine
57	HealthDCAT-AP: enabling FAIR bioinformatics data catalogs for EHDS compliance and AI-driven health-apps
58	Integrating cell type specific signals improves TF targeting in TFEA.ChIP
59	Integrative Transcriptomic and Network Analysis Uncovers HIV Biomarkers and Therapeutic Targets
60	Towards Enhanced Computational Prediction of Anti-CRISPR Proteins
61	MD-core: a new Nextflow pipeline for molecular dynamic simulations
62	Parameter optimization for AI-Based automatic single-cell annotation
63	Prioritisation and Functional Interpretation of Transposable Element Insertions in Type 2 Diabetes Using Lasso Regression: A Whole Exome Sequencing Case Study
64	RELECOV-Platform: a national bioinformatics infrastructure for genomic surveillance of respiratory viruses.
65	Sepsis prediction in emergency care using machine learning
66	Taranys: a gene-by-gene approach for high-resolution epidemiological surveillance bacterial typing
67	The Andalusian genomic surveillance circuit: a scalable strategy for monitoring emerging and endemic pathogens
68	The challenge of inferring interactions from microbial metagenomic data
69	The EU-WISH Joint Action: A Framework for Implementing and Strengthening Wastewater-Based High-Throughput Sequencing in Public Health Surveillance
70	Uncovering the plasma miRNA signature of smoking
71	Understanding plant and plant-associated microbiome responses to abiotic stress through multi-omics
72	Visium HD reveals stage-specific subpopulations in cutaneous Squamous Cell Carcinoma progression
73	WfExS 1.0: Secure and Reproducible Workflow Execution for Sensitive Data Analyses
74	Tool for FAIRifying Clinical Data and Images in Federated Environments
75	Tools for High-Throughput Sequencing Data Management in Public Health Bioinformatics Facilities
76	Towards a Deep Learning Framework to Annotate Enzyme-Substrate Catalytic Interactions
77	Exploring the Relationship Between Structural Metamorphism and Protein Multifunctionality
78	Genomic divergence and structural variation in polar seabirds using de novo assemblies

Panel Number	Poster name
1	Exploiting Single-cell data to unravel the impact of MAGEL2 disruptions
2	Exploration of the chemoreceptors landscape in the rare microbial biosphere
3	EMPTY – RETRACTED
4	Exploring the Function of Long Non-Coding RNAs in Bull Spermatogenesis
5	Exploring the impact of transcription elongation rates on cell plasticity
6	Federated Execution Manager (FEM): A Generic Solution for Federated Analysis in Biomedical Projects
7	FungiGut: Bioinformatic workflow for precise taxonomical profiling in human gut analisys
8	Gathering execution technical metrics in ELIXIR-STEERS: from low-level metrics to measuring software usage’s carbon footprint (Anna Golobardes)
9	Generative AI for Childhood and Adult Cancer Research
10	Machine Learning-Based RNA-Seq Classifiers for Prostate and Breast Cancer: Toward Non-Invasive Diagnostics
11	Green Single Cell: A transcriptomic atlas of the Chlamydomonas reinhardtii life cycle
12	Identifying Cell Types Underlying Rare Diseases Phenotypes Using scRNA-seq Data
13	Inferring vegetative microbial transmission in banana plants through metabarcoding and computational analysis
14	Integrated genomic and proteomic neoepitope quantification reveals immune escape in colorectal cancer
15	Integrative analysis of alternative splicing and m6A RNA modifications in neuroendocrine neoplasms
16	Integrative computational approaches for multi-omic characterization of SWI/SNF-deficient lung adenocarcinoma
17	Join & Call vs. Call & Join – Identifying Transcripts Across Biological Replicates
18	Leveraging LLMs to Structure Sarcoma EHRs for Clinical Integration
19	Machine Learning Assessment of Synthetic Data in Clinical Research Applications
20	Machine Learning Models for Mortality Risk in People with HIV
21	Making Phenopackets Beacon-Ready: Standard Integration via EGA’s BFF Converter
22	MANAGEMENT OF SECONDARY FINDINGS IN MASSIVE SEQUENCING DATA WITH SFTOOL
23	Managing Block-Wise Missingness in Multi-Omics Datasets
24	Mapping barley diversity on graph-based pangenomes
25	Mapping sex differences in multiple sclerosis clinical courses at single-cell resolution
26	MePRAM: Integrated Clinical and Genomic Data for MDR Bacterial Surveillance
27	Meta-Transcriptomic Analysis of Pancreatic Islets in Type 1 Diabetes
28	Metabopathia: Enhancing disease mechanism understanding through mechanistic integration of transcriptomic and metabolic data
29	Metabotype discovery with Supervised Clustering
30	Metagenomics and food imaging for dietary assessment in celiac and overweight cohorts
31	Integrative Analysis of Sex- and Cell-Type-Specific Transposable Element Dynamics in Parkinson’s Disease
32	Microbiome gut community structure and functionality are associated with symptom severity in non-responsive celiac disease patients undergoing a gluten-free diet
33	Modeling Conformational Transitions in Metamorphic Proteins Using Contact-Guided Enhanced Sampling
34	Mycobacterium tuberculosis global SNPs database: A new tool to optimize transmission surveillance.
35	NTxPred2: A large language model for predicting neurotoxic peptides and neurotoxins
36	OmicSpace: A Federated and Multimodal Data Space Integrating Genomic and Clinical Information
37	Ontology-Augmented Large Language Models to develop Curated Catalogues of Neurodegeneration Omics Cohorts
38	PERSEO: A GAMLSS-Based Framework for Feature-Wise Differential Expression Analysis
39	Pfirrmann Grade Classification of Lumbar discs using Machine Learning and Radiomics
40	PITIsFinder: detection and characterization of Mobile Genetic Elements in bacterial genomes
41	Protein NanoHedra database (PNHdb): An innovative database for designing novel symmetric proteins
42	Radiation Necrosis vs. Tumor Progression in Brain Metastases: A Predictive Tool for Clinical Practice
43	Radiomics versus Deep Learning MRI Classification of Prostate Cancer Severity
44	Refining mutational signatures by integrating tumor evolution
45	REPAIRome: A comprehensive genetic catalog of human double-strand break repair
46	scRNA-seq reveals that metabolic syndrome alters cell cycle progression after partial hepatectomy
47	Search for Genotype-Phenotype associations in genetic diseases with Machine Learning
48	Sex Differences in Alzheimer’s disease Gut Microbiome: A Comparative Meta‑Analysis
49	Sex-Specific Extracellular Vesicles Signatures in Alcohol Use Disorder: Insights from Multiomics Integration
50	Single-cell analysis of epistatic interactions from somatic mutations on breast cancer
51	Software packages for querying and mining biological knowledge networks
52	SQANTI-single cell: Quality control and curation of long-read single cell sequencing data
53	Standard-of-Care Therapy Induces Phenotypic Reprogramming of Non-Malignant Oligodendrocytes in Glioblastoma
54	Strengthening Genomic Surveillance: A machine readable priority pathogen list and the Spanish Pathogens Portal
55	System Medicine approach reveals prognostic signatures in acute decompensation of cirrhosis patients
56	Systematic exploration of the composition-to-function relationship in natural microbiomes with random forest
57	Tertiary lymphoid structure signature predicts better outcomes in small cell lung cancer and reveals new therapeutic opportunities.
58	The pegi3s Bioinformatics Docker Images Project
59	The state of the human coding gene catalogues
60	Leveraging gene regulation and cell signalling to drive drug repurposing for COVID-19 disease
61	Tracking Genomic Adaptation to Copper Stress in Yeast Using an Integrated Bioinformatics Pipeline
62	Transcription factor-based biosensors design with ProtGPT2.
63	Transcriptome Universal Single-isoform COntrol: A Framework for Evaluating Transcriptome reconstruction Quality
64	Transcriptomic landscape of Olaparib treatment in HGSOC organoids
65	RETRACTED – EMPTY SLOT
66	Uncovering combination therapies for Immune-Mediated Inflammatory Diseases through systems biology analysis on longitudinal patient data
67	Uncovering new gene–rare disease associations using Systems Biology in WES and WGS
68	Uncovering the regulatory landscape of early human B-cell lymphopoiesis and its implications in the pathogenesis of B-ALL
69	Uncovering YTHDC1’s role in T cell proliferation by integrating Nanopore-seq and iCLIP-seq
70	Understanding CD8+ T cell priming by cDC1 at the single-cell level using computational approaches
71	Understanding colorectal cancer lung metastasis using single-cell and spatial transcriptomics
72	Unveiling the comprehensive spliceosomic landscape of neuroendocrine tumors through an integrative pipeline
73	VEGFA Sex-Specific Signature is associated to long COVID Symptom Persistence
74	Viral miRNA-mediated virus-host interactions: towards a deeper understanding of viral pathogenesis
75	A Modular Compi Pipeline for Reproducible RNA-Seq Differential Expression and Pathway Analysis
76	BinderFlow: A batch-based pipeline for protein binder design
77	TGFβ alters the alternative splicing pattern in hepatic stellate cells